SNP Profiles of LCT EEN 37 /I   View Data

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 Key

 1234567891011121314
_Input profile
CCAGCGCTCTACCCGGTTCTAAAGCTAA
1._GC-08-217-6-13
CCAGCGCTCTACCCGGTTCTAAAGCTAA
2._RUQ_156
__CC____GG_CC_GG_AA
3._GC-08-217-6-13
CCGGCCTTCTACCTGGTTCCAA_CCAA
4._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAA_CCAA
5._RUQ_156
_GGCCTT___GG____CCAA
6._GC-08-217-6-13
CCGGCCTTCTACCTGGTTCCAAGGCCAA
7._GC-08-218-6-14
CCGGCCTTCTACCTGGTTCCAAGGCCAA
8._GC-04-004-1-04
CCGGCCTTCTACCTGGTTCCAAGGCCAA
9._GC-04-004-1-04
CCGGCCTTCTACCTGGTTCCAAGGCCAA
10._GC-04-004-1-04
CCGGCCTTCTACCTGGTTCCAAGGCCAA
11._GC-04-004-1-04
CCGGCCTTCTACCTGGTTCCAAGGCCAA
12._GC-04-004-1-04
CCGGCCTTCTACCTGGTTCCAAGGCCAA
13._GC-08-217-6-13
CCGGCCTTCTACCTGGTTCCAAGGCCAA
14._GC-08-217-6-13
CCGGCCTTCTACCTGGTTCCAAGGCCAA
15._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
16._GC-08-218-6-14
CCGGCCTTCTACCTGGTTCCAAGGCCAA
17._GC-08-218-6-14
CCGGCCTTCTACCTGGTTCCAAGGCCAA
18._GC-08-218-6-14
CCGGCCTTCTACCTGGTTCCAAGGCCAA
19._GC-08-218-6-14
CCGGCCTTCTACCTGGTTCCAAGGCCAA
20._GC-08-218-6-14
CCGGCCTTCTACCTGGTTCCAAGGCCAA
21._GC-08-218-6-14
CCGGCCTTCTACCTGGTTCCAAGGCCAA
22._GC-08-218-6-14
CCGGCCTTCTACCTGGTTCCAAGGCCAA
23._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
24._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
25._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
26._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
27._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
28._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
29._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
30._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
31._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
32._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
33._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
34._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
35._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
36._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
37._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
38._RUQ_156
CCGGCCTTCTACCTGGTTCCAAGGCCAA
39._GC-08-217-6-13
CCGGCCTTCTACCTGGTTCCAAGGCCAA
40._GC-08-218-6-14
CCGGCCTTCTACCTGGTTCCAAGGCCAA
41._GC-08-218-6-14
CCGGCCTTCTACCTGGTTCCAAGGCCAA
42._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
43._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
44._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
45._RUQ_156
GGGGGGAAAGACAGCC__AAGGGGAA
 1516171819202122232425262728
_Input profile
CTATCGCTCTCGGTAACTCCCCGGCCAA
1._GC-08-217-6-13
CTATCGCTCTCGGTAACTCCCCGGCCAA
2._RUQ_156
_____CCGTAA_CC___AA
3._GC-08-217-6-13
CTATGGCTTTCCGTAATTCCGGGGCCAA
4._LCT_EEN_37_/I
CTATGGCTTTCCGTAATTCCGGGGCCAA
5._RUQ_156
____TTCCGT_TTCCCGGGCCAA
6._GC-08-217-6-13
CTATGGCTTTCCGTAATTCCGGGGCCAA
7._GC-08-218-6-14
CTATGGCTTTCCGTAATTCCGGGGCCAA
8._GC-04-004-1-04
CTATGGCTTTCCGTAATTCCGGGGCCAA
9._GC-04-004-1-04
CTATGGCTTTCCGTAATTCCGGGGCCAA
10._GC-04-004-1-04
CTATGGCTTTCCGTAATTCCGGGGCCAA
11._GC-04-004-1-04
CTATGGCTTTCCGTAATTCCGGGGCCAA
12._GC-04-004-1-04
CTATGGCTTTCCGTAATTCCGGGGCCAA
13._GC-08-217-6-13
CTATGGCTTTCCGTAATTCCGGGGCCAA
14._GC-08-217-6-13
CTATGGCTTTCCGTAATTCCGGGGCCAA
15._LCT_EEN_37_/I
CTATGGCTTTCCGTAATTCCGGGGCCAA
16._GC-08-218-6-14
CTATGGCTTTCCGTAATTCCGGGGCCAA
17._GC-08-218-6-14
CTATGGCTTTCCGTAATTCCGGGGCCAA
18._GC-08-218-6-14
CTATGGCTTTCCGTAATTCCGGGGCCAA
19._GC-08-218-6-14
CTATGGCTTTCCGTAATTCCGGGGCCAA
20._GC-08-218-6-14
CTATGGCTTTCCGTAATTCCGGGGCCAA
21._GC-08-218-6-14
CTATGGCTTTCCGTAATTCCGGGGCCAA
22._GC-08-218-6-14
CTATGGCTTTCCGTAATTCCGGGGCCAA
23._LCT_EEN_37_/I
CTATGGCTTTCCGTAATTCCGGGGCCAA
24._LCT_EEN_37_/I
CTATGGCTTTCCGTAATTCCGGGGCCAA
25._LCT_EEN_37_/I
CTATGGCTTTCCGTAATTCCGGGGCCAA
26._LCT_EEN_37_/I
CTATGGCTTTCCGTAATTCCGGGGCCAA
27._LCT_EEN_37_/I
CTATGGCTTTCCGTAATTCCGGGGCCAA
28._LCT_EEN_37_/I
CTATGGCTTTCCGTAATTCCGGGGCCAA
29._LCT_EEN_37_/I
CTATGGCTTTCCGTAATTCCGGGGCCAA
30._LCT_EEN_37_/I
CTATGGCTTTCCGTAATTCCGGGGCCAA
31._LCT_EEN_37_/I
CTATGGCTTTCCGTAATTCCGGGGCCAA
32._LCT_EEN_37_/I
CTATGGCTTTCCGTAATTCCGGGGCCAA
33._LCT_EEN_37_/I
CTATGGCTTTCCGTAATTCCGGGGCCAA
34._LCT_EEN_37_/I
CTATGGCTTTCCGTAATTCCGGGGCCAA
35._LCT_EEN_37_/I
CTATGGCTTTCCGTAATTCCGGGGCCAA
36._LCT_EEN_37_/I
CTATGGCTTTCCGTAATTCCGGGGCCAA
37._LCT_EEN_37_/I
CTATGGCTTTCCGTAATTCCGGGGCCAA
38._RUQ_156
CTATGGCTTTCCGTAATTCCGGGGCCAA
39._GC-08-217-6-13
CTATGGCTTTCCGTAATTCCGGGGCCAA
40._GC-08-218-6-14
CTATGGCTTTCCGT_TTCCGGGGCCAA
41._GC-08-218-6-14
CTATGGCTTTCCGT_TTCCGGGGCCAA
42._LCT_EEN_37_/I
CTATGGCTTTCCGT_TTCCGGGGCCAA
43._LCT_EEN_37_/I
CTATGGCTTTCCGT_TTCCGGGGCCAA
44._LCT_EEN_37_/I
CTATGGCTTTCCGTAATTCCGGGGCCAA
45._RUQ_156
AGATGGAGAAGGAC_AACCCGCC_AA
 293031323334353637383940  
_Input profile
AGAGAACCAGCCCCCTGTCCAACGX_XX_X
1._GC-08-217-6-13
AGAGAACCAGCCCCCTGTCCAACGX_XX_X
2._RUQ_156
____AG____AC__X_XX_X
3._GC-08-217-6-13
AGAAATCCAGCCCCTTGGACATGGX_XX_X
4._LCT_EEN_37_/I
AGAAATCCAGCCCCTTGGACATGGX_XX_X
5._RUQ_156
AG_ATCCAGCCCCTTGGAC__X_XX_X
6._GC-08-217-6-13
AGAAATCCAGCCCCTTGGACATGGX_XX_X
7._GC-08-218-6-14
AGAAATCCAGCCCCTTGGACATGGX_XX_X
8._GC-04-004-1-04
AGAAATCCAGCCCCTTGGACATGGX_XX_X
9._GC-04-004-1-04
AGAAATCCAGCCCCTTGGACATGGX_XX_X
10._GC-04-004-1-04
AGAAATCCAGCCCCTTGGACATGGX_XX_X
11._GC-04-004-1-04
AGAAATCCAGCCCCTTGGACATGGX_XX_X
12._GC-04-004-1-04
AGAAATCCAGCCCCTTGGACATGGX_XX_X
13._GC-08-217-6-13
AGAAATCCAGCCCCTTGGACATGGX_XX_X
14._GC-08-217-6-13
AGAAATCCAGCCCCTTGGACATGGX_XX_X
15._LCT_EEN_37_/I
AGAAATCCAGCCCCTTGGACATGGX_XX_X
16._GC-08-218-6-14
AGAAATCCAGCCCCTTGGACATGGX_XX_X
17._GC-08-218-6-14
AGAAATCCAGCCCCTTGGACATGGX_XX_X
18._GC-08-218-6-14
AGAAATCCAGCCCCTTGGACATGGX_XX_X
19._GC-08-218-6-14
AGAAATCCAGCCCCTTGGACATGGX_XX_X
20._GC-08-218-6-14
AGAAATCCAGCCCCTTGGACATGGX_XX_X
21._GC-08-218-6-14
AGAAATCCAGCCCCTTGGACATGGX_XX_X
22._GC-08-218-6-14
AGAAATCCAGCCCCTTGGACATGGX_XX_X
23._LCT_EEN_37_/I
AGAAATCCAGCCCCTTGGACATGGX_XX_X
24._LCT_EEN_37_/I
AGAAATCCAGCCCCTTGGACATGGX_XX_X
25._LCT_EEN_37_/I
AGAAATCCAGCCCCTTGGACATGGX_XX_X
26._LCT_EEN_37_/I
AGAAATCCAGCCCCTTGGACATGGX_XX_X
27._LCT_EEN_37_/I
AGAAATCCAGCCCCTTGGACATGGX_XX_X
28._LCT_EEN_37_/I
AGAAATCCAGCCCCTTGGACATGGX_XX_X
29._LCT_EEN_37_/I
AGAAATCCAGCCCCTTGGACATGGX_XX_X
30._LCT_EEN_37_/I
AGAAATCCAGCCCCTTGGACATGGX_XX_X
31._LCT_EEN_37_/I
AGAAATCCAGCCCCTTGGACATGGX_XX_X
32._LCT_EEN_37_/I
AGAAATCCAGCCCCTTGGACATGGX_XX_X
33._LCT_EEN_37_/I
AGAAATCCAGCCCCTTGGACATGGX_XX_X
34._LCT_EEN_37_/I
AGAAATCCAGCCCCTTGGACATGGX_XX_X
35._LCT_EEN_37_/I
AGAAATCCAGCCCCTTGGACATGGX_XX_X
36._LCT_EEN_37_/I
AGAAATCCAGCCCCTTGGACATGGX_XX_X
37._LCT_EEN_37_/I
AGAAATCCAGCCCCTTGGACATGGX_XX_X
38._RUQ_156
AGAAATCCAGCCCCTTGGACATGGX_XX_X
39._GC-08-217-6-13
AGAAATCCAG_CCTTGGACATGGX_XX_X
40._GC-08-218-6-14
AGAAATCCAGCCCCTTGGACATGGX_XX_X
41._GC-08-218-6-14
AGAAATCCAGCCCCTTGGACATGGX_XX_X
42._LCT_EEN_37_/I
AGAAATCCAGCCCCTTGGACATGGX_XX_X
43._LCT_EEN_37_/I
AGAAATCCAGCCCCTTGGACATGGX_XX_X
44._LCT_EEN_37_/I
AGAAATCCAG_CCTTGGACATGGX_XX_X
45._RUQ_156
_AAATGGAGGGCCAACC_ATGGX_XX_X

Input profile: LCT_EEN_37_/I

 
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Mars Center for Cocoa Science, Brazil
Location: 8613 5
 Dapeng Zhang, 2016

1._LCT_EEN_37_/I GC-08-217-6-13

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

2._LCT_EEN_37_/I RUQ_156

79.2 %
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

3._LCT_EEN_37_/I GC-08-217-6-13

75.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

4._LCT_EEN_37_/I

75.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8613 6
 Dapeng Zhang, 2016

5._LCT_EEN_37_/I RUQ_156

75 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

6._LCT_EEN_37_/I GC-08-217-6-13

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

7._LCT_EEN_37_/I GC-08-218-6-14

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

8._LCT_EEN_37_/I GC-04-004-1-04

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP1
 Mars, 2018

9._LCT_EEN_37_/I GC-04-004-1-04

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

10._LCT_EEN_37_/I GC-04-004-1-04

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

11._LCT_EEN_37_/I GC-04-004-1-04

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP2
 Mars, 2018

12._LCT_EEN_37_/I GC-04-004-1-04

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

13._LCT_EEN_37_/I GC-08-217-6-13

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

14._LCT_EEN_37_/I GC-08-217-6-13

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

15._LCT_EEN_37_/I

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8614 10
 Dapeng Zhang, 2016

16._LCT_EEN_37_/I GC-08-218-6-14

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

17._LCT_EEN_37_/I GC-08-218-6-14

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

18._LCT_EEN_37_/I GC-08-218-6-14

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

19._LCT_EEN_37_/I GC-08-218-6-14

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

20._LCT_EEN_37_/I GC-08-218-6-14

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

21._LCT_EEN_37_/I GC-08-218-6-14

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

22._LCT_EEN_37_/I GC-08-218-6-14

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

23._LCT_EEN_37_/I

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4104 6
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

24._LCT_EEN_37_/I

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8614 9
 Dapeng Zhang, 2016

25._LCT_EEN_37_/I

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8614 7
 Dapeng Zhang, 2016

26._LCT_EEN_37_/I

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8614 6
 Dapeng Zhang, 2016

27._LCT_EEN_37_/I

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8614 5
 Dapeng Zhang, 2016

28._LCT_EEN_37_/I

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8614 3
 Dapeng Zhang, 2016

29._LCT_EEN_37_/I

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8614 2
 Dapeng Zhang, 2016

30._LCT_EEN_37_/I

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8614 1
 Dapeng Zhang, 2016

31._LCT_EEN_37_/I

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8613 9
 Dapeng Zhang, 2016

32._LCT_EEN_37_/I

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8613 2
 Dapeng Zhang, 2016

33._LCT_EEN_37_/I

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8613 1
 Dapeng Zhang, 2016

34._LCT_EEN_37_/I

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4104 8 > FP
 Dapeng Zhang, 2016

35._LCT_EEN_37_/I

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4104 7 > FP
 Dapeng Zhang, 2016

36._LCT_EEN_37_/I

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4104 5 > FP
 Dapeng Zhang, 2016

37._LCT_EEN_37_/I

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4104 4 > FP
 Dapeng Zhang, 2016

38._LCT_EEN_37_/I RUQ_156

75 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

39._LCT_EEN_37_/I GC-08-217-6-13

74.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

40._LCT_EEN_37_/I GC-08-218-6-14

74.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

41._LCT_EEN_37_/I GC-08-218-6-14

74.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

42._LCT_EEN_37_/I

74.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8614 8
 Dapeng Zhang, 2016

43._LCT_EEN_37_/I

74.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8614 4
 Dapeng Zhang, 2016

44._LCT_EEN_37_/I

74.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8613 10
 Dapeng Zhang, 2016

45._LCT_EEN_37_/I RUQ_156

38.2 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25